hilive software package provides realtime alignment of Illumina reads, you can install in your Debian 9 (Stretch) by running the commands given below on the terminal,
$ sudo apt-get update $ sudo apt-get install hilive
hilive is installed in your system.
Make ensure the hilive package were installed using the commands given below,
$ sudo dpkg-query -l | grep hilive *
You will get with hilive package name, version, architecture and description in a table
| Distro | Debian 9 stretch |
| Section | Science |
| Package | hilive |
| Version | 0.0+20150926-1 |
| Description | realtime alignment of Illumina reads |
| Sub Section | Science |
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